PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11093
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 381aa    MW: 41969.4 Da    PI: 7.0532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11093genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.9e-10731226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                +++ C +++ t tCk+G+ CkF H+
  PEQU_11093  7 GEKDCVHYMLTRTCKFGEACKFDHP 31
                7889********************9 PP

2zf-CCCH38.12.5e-125884127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C++f++t tCkyG++CkF+H++
  PEQU_11093 58 PGEPDCPYFLKTQTCKYGSKCKFNHPR 84
                5789*********************96 PP

3zf-CCCH38.32.2e-12110134327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C f+a+tG Ck+G++CkF+H++
  PEQU_11093 110 EAVCTFYAKTGKCKFGANCKFHHPK 134
                 689********************96 PP

4zf-CCCH38.42.1e-12182207126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +++++C+f+++tG CkyG++C+++H+
  PEQU_11093 182 PGEAECPFYLKTGSCKYGATCRYSHP 207
                 5789*********************9 PP

5zf-CCCH40.54.6e-13265288326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +C++++rtG+Ck+G+rC+F+H+
  PEQU_11093 265 EIECDYYMRTGHCKFGERCRFHHP 288
                 568********************9 PP

6zf-CCCH40.64.2e-13320343427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 + C+f+++tG+CkyG  C+F H+p
  PEQU_11093 320 VACPFYMKTGICKYGVACRFDHPP 343
                 78********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.774533IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-4532IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5632IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7731IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3855785IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-65784IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-105984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-66287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-66385IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-7107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328107135IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10110134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5112132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061181209IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7181208IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10183207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5185208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5187206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159262290IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-7262289IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10265288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-7265290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5268288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831316344IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7316343IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10319343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5320343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4322341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MYPQRPGEKD CVHYMLTRTC KFGEACKFDH PVWVPEGGIP DWKEVPLIPT SESLPERPGE  60
PDCPYFLKTQ TCKYGSKCKF NHPREKLSAS ITVASIEFPF NSELPERPSE AVCTFYAKTG  120
KCKFGANCKF HHPKGIQIQS AGKDTGYPEK NESTTYNADA AKTFVSFSPA FLHNSKGLPI  180
RPGEAECPFY LKTGSCKYGA TCRYSHPDRV FINPTHTANL NNAILTPAVA SYPLGVVNPA  240
ATFLPTVDPR LAQVGVTVYP QRPGEIECDY YMRTGHCKFG ERCRFHHPVD RSIPNATSAK  300
QPQESVKLTL AGLPRREGSV ACPFYMKTGI CKYGVACRFD HPPPGEAVAM AQVTSGTAEA  360
SNGDRSGEEE EDEEDTGESS E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260864.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-158C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7T0Z41e-172D7T0Z4_VITVI; Putative uncharacterized protein
STRINGVIT_19s0085g01180.t011e-172(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-158floral homeotic protein (HUA1)